PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001108.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 366aa    MW: 39614.7 Da    PI: 6.9655
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001108.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.73.4e-3746162289
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                              +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++                      
  Itr_sc001108.1_g00002.1  46 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMKKAKPAIDELAQLpawkpiihhgehennllntnvv 131
                              79**************************************************************8888777777777777766666 PP

                      TCP  66 ssssaseceaesssssasnsssg..........k 89 
                                +s+s+c+++ +++++++   +          +
  Itr_sc001108.1_g00002.1 132 AGPSSSSCKTVGENENHGS---SflppttsmdsD 162
                              4444455532222222221...122233334441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-3346143IPR005333Transcription factor, TCP
PROSITE profilePS5136934.49648106IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGENQNQNQR SWSRLGVVRN AAAAAAFGGG GEIVEVRGGG HIVRSTGRKD RHSKVCTAKG  60
PRDRRVRLSA HTAIQFYDVQ DRLGYDRPSK AVDWLMKKAK PAIDELAQLP AWKPIIHHGE  120
HENNLLNTNV VAGPSSSSCK TVGENENHGS SFLPPTTSMD SDAIADTLIK SFFPIPNSNS  180
SANAMHFQTQ DLRLSLQSFQ DPTILLHHHA LPASHGESQH LFTATQLGFN ASQHHQRLAV  240
WNAGIDSAAG DGERVSSGSG TEGYLFNSPA PAPALYEQVV GGESHPQFLC SQRGPLQSSN  300
TPWIRAWTEP SAATQHQTLP FYPSPLSSGL DGFSGFRIPA RIQGEEEEEH DGISDKLSSA  360
SSHSCH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453253.11e-113PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR56e-84TCP4_ARATH; Transcription factor TCP4
TrEMBLE2GIJ01e-111E2GIJ0_IPONI; TCP family transcription factor TCP4
STRINGPGSC0003DMT4000322681e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.38e-75TCP family protein